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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26677312_26678287_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26677312 - 26678287
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
TTCTCATTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCAATTAAAA
Flanking Amino Acid:
YWKTATGRFKDTLALLLTDV
Intron Amino Acid Position:
1080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.5
0.57
1
79.6
31.6
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
55.2
0.16
1.9
73.18
37.4

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765
ENSAPLT00000019003
26644124 - 26703195
59072
ENSAPLT00000008616
26644124 - 26739888
95765