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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26681213_26681683_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26681213 - 26681683
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTCAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTATGCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
DVIKRQDVIFELGQTEVHHI
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.3
79.8
35.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.6
0.64
0.9
73.5
36.7
Minor 5ss
34.9
-1.7
2.7
40.1
39.6
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019003
26644124 - 26703195
59072
ENSAPLT00000008616
26644124 - 26739888
95765
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765