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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26683532_26683636_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26683532 - 26683636
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGGGT
5'SS Class:
major
3'SS Sequence:
CCTGCTATGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CATTAAATATTT
Flanking Amino Acid:
SKSVPSASSERSMPFPEEDS
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
61.5
40.3
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
54.7
0.11
1.2
56.3
37.8
Minor 5ss
28.9
-2.4
3.9
46.4
49
Minor BPS
41.5
-0.5
2.1
60.46
42.8

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008616
26644124 - 26739888
95765
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765
ENSAPLT00000019003
26644124 - 26703195
59072