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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26695233_26697104_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26695233 - 26697104
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAGCA
Flanking Amino Acid:
IYANCMVVDQVGDSKMNYIH
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
59.9
0.31
1.8
74.85
36.2

Associated Gene:

Gene:
ARHGEF28
Ensembl Gene ID:
ENSAPLG00000008283
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019003
26644124 - 26703195
59072
ENSAPLT00000008616
26644124 - 26739888
95765
ENSAPLT00000040940
26644124 - 26717491
73368
ENSAPLT00000040038
26644124 - 26739888
95765