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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26776108_26776615_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26776108 - 26776615
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
TCTAATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTGTTCTAATT
Flanking Amino Acid:
QISLLLTFVTRRVIEPRFTP
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.6
0.73
0.9
76.6
37
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
52.8
0.17
1.7
72.39
39.2

Associated Gene:

Gene:
UTP15
Ensembl Gene ID:
ENSAPLG00000008503
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008871
26775302 - 26784364
9063