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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26782521_26783662_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26782521 - 26783662
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
CTTTGGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACACTTTTAACA
Flanking Amino Acid:
APLRQFDGHTKAVHVVGFLA
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
63.3
42.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.8
0.71
0.9
72.6
42.4
Minor 5ss
31.8
-2.1
3.3
38.8
40.7
Minor BPS
62.2
0.38
1.2
63.43
36.8

Associated Gene:

Gene:
UTP15
Ensembl Gene ID:
ENSAPLG00000008503
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008871
26775302 - 26784364
9063