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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26783848_26783934_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26783848 - 26783934
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCACAT
U12 Branch Point Sequence:
GTTGCTTTACTT
Flanking Amino Acid:
YNYAVTASSRVHIYGRYSQE
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
72.3
39.5
Major BPS
59.9
0.25
1.2
69
38.9
Major PPT
88.5
0.87
0.7
80.9
36.6
Minor 5ss
34.1
-1.8
2.9
36.4
40.6
Minor BPS
59.4
0.37
1.7
75.88
41.7

Associated Gene:

Gene:
UTP15
Ensembl Gene ID:
ENSAPLG00000008503
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008871
26775302 - 26784364
9063