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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26787176_26788548_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26787176 - 26788548
Intron Length:
1373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCCCTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
ATCACCTGATTT
Flanking Amino Acid:
EVSTTPLLVNSLSVHQLAAQ
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
83.4
0.75
0.7
79.8
25.6
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
49.8
0.07
1.8
68.05
42.9

Associated Gene:

Gene:
ANKRA2
Ensembl Gene ID:
ENSAPLG00000008765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040313
26784521 - 26791214
6694
ENSAPLT00000009139
26784521 - 26792099
7579