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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26790961_26792043_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26790961 - 26792043
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CACTGATTAACC
Flanking Amino Acid:
DLAVALGYRSVQQVIESHLL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
71.2
0.53
1
61
37.5
Major PPT
78.7
0.65
0.8
77.4
31.4
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
49.5
-0
2.1
60.38
44.6

Associated Gene:

Gene:
ANKRA2
Ensembl Gene ID:
ENSAPLG00000008765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009139
26784521 - 26792099
7579