Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26831965_26832326_F

Intron Information:

Intron Rank:

142777

Intron Class:

major

Intron Phase:

Intron Coordinates:

26831965 - 26832326

Intron Length:

362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTTT

U12 Branch Point Sequence:

TTTTTTTTGCTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

81.2

32.7

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

85.1

0.79

0.7

81.1

30.9

Minor 5ss

35.9

-1.6

3.5

51.5

45.7

Minor BPS

46.8

-0.1

3.4

81.5

34.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026985

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046282

26831329 - 26833278

1950