Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26840100_26843222_R

Intron Information:

Intron Rank:

130104

Intron Class:

major

Intron Phase:

Intron Coordinates:

26840100 - 26843222

Intron Length:

3123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTGTA

5'SS Class:

major

3'SS Sequence:

TCTTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTAAT

U12 Branch Point Sequence:

ATTGCTGTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.1

0.4

1.3

68.8

Major BPS

72.1

0.55

1.2

73.3

39.1

Major PPT

89.5

0.89

0.6

22.6

Minor 5ss

32.7

-2

3.3

44.6

43.6

Minor BPS

49.5

-0.1

2.1

60.82

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017212

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044485

26839361 - 26846757

7397

ENSAPLT00000026927

26839361 - 26846757

7397