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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26985965_26987665_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26985965 - 26987665
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTGTAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
KGGCNASFITRAQFADDDRT
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1
60.7
34.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
37.7
-1.4
3.2
49.3
47.3
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
TMEM171
Ensembl Gene ID:
ENSAPLG00000009115
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009476
26985611 - 26990760
5150