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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26990831_26991300_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26990831 - 26991300
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCATATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
100
1.24
0.5
100
0
Major PPT
82.7
0.74
0.8
76.4
36.6
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
56.5
0.28
1.8
78.83
37.6

Associated Gene:

Gene:
TMEM171
Ensembl Gene ID:
ENSAPLG00000009115
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020428
26985611 - 26997120
11510