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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_26991429_26996767_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26991429 - 26996767
Intron Length:
5339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTTGTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
81.6
0.71
0.9
78
40.1
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
71
0.74
2
91.07
32.9

Associated Gene:

Gene:
TMEM171
Ensembl Gene ID:
ENSAPLG00000009115
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020428
26985611 - 26997120
11510