Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27011402_27011639_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27011402 - 27011639

Intron Length:

238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

ACTACCTTTATT

Flanking Amino Acid:

LSLLKKRFATGRYMADC*

Intron Amino Acid Position:

1051

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

74.2

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

90.1

0.9

0.7

88.2

28.6

Minor 5ss

39.8

-1.1

3.1

53.4

45.6

Minor BPS

61.7

0.45

1.7

74.96

41.7

Associated Gene:

Gene:

FCHO2

Ensembl Gene ID:

ENSAPLG00000009230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033804

27009900 - 27098730

88831

ENSAPLT00000009628

27011379 - 27098730

87352