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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27051458_27053254_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27051458 - 27053254
Intron Length:
1797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
GATATTTGAATA
Flanking Amino Acid:
EECNTSSAVEGIKPRKRKPF
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
80.9
0.69
0.8
76.8
32
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
50.8
0.02
1.4
58.58
34.6

Associated Gene:

Gene:
FCHO2
Ensembl Gene ID:
ENSAPLG00000009230
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009628
27011379 - 27098730
87352
ENSAPLT00000033804
27009900 - 27098730
88831