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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27087076_27089508_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27087076 - 27089508
Intron Length:
2433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTTTCTTTGACA
Flanking Amino Acid:
TKELADFIRERATIEEAYSR
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
82.1
0.72
0.9
79.4
32.6
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
78.9
0.9
1.1
81.99
33.2

Associated Gene:

Gene:
FCHO2
Ensembl Gene ID:
ENSAPLG00000009230
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033804
27009900 - 27098730
88831
ENSAPLT00000009628
27011379 - 27098730
87352