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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27115290_27117950_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27115290 - 27117950

Intron Length:

2661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGTTC

5'SS Class:

strong_major

3'SS Sequence:

CCATCGCTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTACTTTCAATT

Flanking Amino Acid:

KDDLRDMFCKILHGFKNQVG

Intron Amino Acid Position:

856

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

75.8

34.6

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

67.4

0.39

0.9

57.9

38.3

Minor 5ss

41.4

-1

3.3

58.9

45.9

Minor BPS

0.33

1.5

74.06

Associated Gene:

Gene:

TNPO1

Ensembl Gene ID:

ENSAPLG00000009619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010077

27115147 - 27176364

61218