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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27118026_27119491_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27118026 - 27119491
Intron Length:
1466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
TTTAACCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AATTGTTTAACC
Flanking Amino Acid:
ISVNPSGVVQDFIFFCDAVA
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.7
36.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.6
0.6
0.9
70
36.2
Minor 5ss
40
-1.1
3.1
51.1
39.8
Minor BPS
66.2
0.49
1.7
73.79
36.9

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218