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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27119592_27120390_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27119592 - 27120390
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TCCAACTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGCTCTCCAACT
Flanking Amino Acid:
APMLQQFIRPWCTSLRNIRD
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
62.6
0.28
0.9
55.1
39.7
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
52.8
0.17
1.9
73.74
43

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218