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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27124853_27125071_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27124853 - 27125071
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTATTTGTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATTCTGAAAA
Flanking Amino Acid:
LVQKTLAQAMLHNAQPDQYE
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
69.5
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.5
0.57
1.1
73.1
41.9
Minor 5ss
53.8
0.13
2.3
67
39.2
Minor BPS
58.3
0.26
1.5
66.17
39.8

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218