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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27127652_27130119_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27127652 - 27130119
Intron Length:
2468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGTAT
U12 Branch Point Sequence:
CTGACCTGTATG
Flanking Amino Acid:
SNKRVQEAACSAFATLEEEA
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
70.2
37.7
Major BPS
48.6
-0
1.4
49
44.8
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
31.7
-2.1
3
37.9
46.9
Minor BPS
45.4
-0.5
1.9
48.53
45

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218