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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27134607_27134737_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27134607 - 27134737
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AACATCTTGATG
Flanking Amino Acid:
YSEIDIILLKGDVEEDEAIP
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
66.9
0.38
1.1
61.8
42.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
50.1
-0.1
1.4
49.43
38.6

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218