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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27134799_27136199_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27134799 - 27136199
Intron Length:
1401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTTATTTTGACA
Flanking Amino Acid:
CKDVLCRHLTKLIPVLVNGM
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
81.6
0.71
0.8
77.3
31
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
64.4
0.45
1.2
71.16
34.5

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218