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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27143660_27145126_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27143660 - 27145126
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGATTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAATTTTGATT
Flanking Amino Acid:
QFFKHSSPKIRSHAVACVNQ
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.1
30.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
1
65.9
45.2
Minor 5ss
42.4
-0.8
3.1
57.6
47.1
Minor BPS
56.8
0.29
1.2
68.34
36.6

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218