Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27145261_27146297_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27145261 - 27146297

Intron Length:

1037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTTAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAA

U12 Branch Point Sequence:

TGTGTTTTAAAC

Flanking Amino Acid:

LDSEDYNTCEGAFGALQKIC

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.7

37.2

Major BPS

69.5

0.49

1.2

63.7

43.9

Major PPT

70.1

0.45

1.1

66.4

43.3

Minor 5ss

31.6

-2.1

3.1

45.7

Minor BPS

59.9

0.29

1.5

67.55

38.1

Associated Gene:

Gene:

TNPO1

Ensembl Gene ID:

ENSAPLG00000009619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010077

27115147 - 27176364

61218