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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27146405_27153648_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27146405 - 27153648
Intron Length:
7244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGATTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTTCCTCTGATT
Flanking Amino Acid:
DSSPLIRATVGILITTIASK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
64.3
0.32
0.9
62.7
38.7
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
54.4
0.22
1.6
74.1
36.6

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218