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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27153799_27168207_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27153799 - 27168207
Intron Length:
14409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TGTAACTTATTT
Flanking Amino Acid:
IFVLTKLKSEDEPTRSLSGL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
55
0.24
1.8
74.8
41.7

Associated Gene:

Gene:
TNPO1
Ensembl Gene ID:
ENSAPLG00000009619
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010077
27115147 - 27176364
61218