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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27234308_27234406_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27234308 - 27234406
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCTCTTGAA
5'SS Class:
weak_major
3'SS Sequence:
AATTACTGAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATATTAAAC
Flanking Amino Acid:
RVDKLLNENDKFNNLLNKVQ
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.4
50.4
43.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
57.1
0.16
1.1
52.1
41.6
Minor 5ss
18.7
-3.6
3.7
23.4
30.1
Minor BPS
59.7
0.28
1.7
73.63
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022145
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038271
27233958 - 27237726
3769