Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27235321_27237499_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

27235321 - 27237499

Intron Length:

2179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

GTGACAGAGAGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATACAT

U12 Branch Point Sequence:

AATACATCAAAG

Flanking Amino Acid:

KEKFKPNREQVKRDEKHWLW

Intron Amino Acid Position:

351

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

74.8

38.1

Major BPS

66.1

0.4

31.5

Major PPT

39.9

-0.5

1.7

31.6

40.4

Minor 5ss

-1.6

2.9

40.9

45.4

Minor BPS

45.3

-0.4

1.9

51.56

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022145

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038271

27233958 - 27237726

3769