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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27293751_27295985_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27293751 - 27295985
Intron Length:
2235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
HLKQHSLTHKGVKEHKCGIC
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
77.9
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.4
0.73
0.8
76
32.3
Minor 5ss
39.5
-1.2
3.2
55.8
48.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
ZNF366
Ensembl Gene ID:
ENSAPLG00000010278
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010707
27290032 - 27305431
15400