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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27356515_27358498_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27356515 - 27358498
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTGCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
RSGKGLGAAAGRRSLLSAAY
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
70.3
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.9
0.63
0.9
79
34.3
Minor 5ss
28
-2.5
3.2
36
40.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
MRPS27
Ensembl Gene ID:
ENSAPLG00000010577
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011058
27356178 - 27399754
43577