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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27358577_27363844_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27358577 - 27363844
Intron Length:
5268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATTGATTAAAC
Flanking Amino Acid:
EKRQKEEHNLAELANLMDRT
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
93.3
0.97
0.6
92.4
17.9
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
49.5
-0
2.1
64.95
39.8

Associated Gene:

Gene:
MRPS27
Ensembl Gene ID:
ENSAPLG00000010577
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011058
27356178 - 27399754
43577