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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27363916_27365781_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27363916 - 27365781
Intron Length:
1866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTTTTTAATT
Flanking Amino Acid:
LPVSSLTIDRFVDNISSREE
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.5
0.55
0.9
75.9
37.6
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
79.8
1.01
1
88.33
30.2

Associated Gene:

Gene:
MRPS27
Ensembl Gene ID:
ENSAPLG00000010577
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011058
27356178 - 27399754
43577