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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27386845_27388113_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27386845 - 27388113
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCACCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTCCACTGACT
Flanking Amino Acid:
DCFLKQKKYEDALSVVTEIM
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
69.3
0.43
0.8
63.7
32.6
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
56.9
0.3
2
83.54
36.6

Associated Gene:

Gene:
MRPS27
Ensembl Gene ID:
ENSAPLG00000010577
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011058
27356178 - 27399754
43577