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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27388230_27390540_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27388230 - 27390540
Intron Length:
2311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
AAATTATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TACATCTTAATT
Flanking Amino Acid:
QYLATKSEHTWEEERNLGAS
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
42.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.1
0.54
1
67
42.9
Minor 5ss
43.7
-0.7
2.9
56.3
47.9
Minor BPS
69.5
0.69
1.3
77.33
39.4

Associated Gene:

Gene:
MRPS27
Ensembl Gene ID:
ENSAPLG00000010577
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011058
27356178 - 27399754
43577