Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27415795_27416500_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27415795 - 27416500

Intron Length:

706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCATGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TACTTTTTCATG

Flanking Amino Acid:

GKAQWESNMQVTLIPTHDSE

Intron Amino Acid Position:

2535

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

72.3

40.1

Major BPS

100

1.24

0.5

100

Major PPT

82.4

0.73

0.9

76.8

Minor 5ss

45.1

-0.5

3.2

65.3

46.1

Minor BPS

49.2

-0.2

1.8

41.4

Associated Gene:

Gene:

MAP1B

Ensembl Gene ID:

ENSAPLG00000030918

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032100

27413967 - 27482545

68579