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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27585432_27629374_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27585432 - 27629374
Intron Length:
43943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
DPSQHNKEPQMSQKYWSFTD
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
PGM5
Ensembl Gene ID:
ENSAPLG00000011043
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038652
27584288 - 27697735
113448