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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27607132_27629374_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27607132 - 27629374
Intron Length:
22243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTGGATGAAAA
Flanking Amino Acid:
DPSQHNKEPQSTFKKQHLSP
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
44.4
-0.4
2.2
62.84
42.9

Associated Gene:

Gene:
PGM5
Ensembl Gene ID:
ENSAPLG00000011043
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044866
27607066 - 27697735
90670