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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27615251_27627613_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27615251 - 27627613
Intron Length:
12363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TCTTCTCTATGT
Flanking Amino Acid:
LGILLCSTGWRLC*
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.2
0.84
0.6
85
22.6
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
47.9
-0
2.2
71.91
45.3

Associated Gene:

Gene:
PGM5
Ensembl Gene ID:
ENSAPLG00000011043
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011529
27614361 - 27697735
83375