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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27635232_27636139_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
27635232 - 27636139
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATATATATGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATAT
Flanking Amino Acid:
WAKFGRHYYCRFDYEALEPR
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
52.8
0.06
1.2
53.6
44.1
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
63.5
0.5
1.7
80.55
41.4

Associated Gene:

Gene:
PGM5
Ensembl Gene ID:
ENSAPLG00000011043
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044866
27607066 - 27697735
90670
ENSAPLT00000041634
27615161 - 27697735
82575
ENSAPLT00000038652
27584288 - 27697735
113448
ENSAPLT00000011529
27614361 - 27697735
83375
ENSAPLT00000046853
27614091 - 27697735
83645