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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27686837_27689552_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27686837 - 27689552
Intron Length:
2716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CTTTTCTTACAG
Flanking Amino Acid:
FGVKFEVANGGPAPDAVSDK
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.8
38.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
33.3
-1.9
3.4
49
47.2
Minor BPS
56.2
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
PGM5
Ensembl Gene ID:
ENSAPLG00000011043
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038652
27584288 - 27697735
113448
ENSAPLT00000011529
27614361 - 27697735
83375
ENSAPLT00000046853
27614091 - 27697735
83645
ENSAPLT00000044866
27607066 - 27697735
90670
ENSAPLT00000041634
27615161 - 27697735
82575