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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27689716_27697474_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27689716 - 27697474
Intron Length:
7759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATATTTTAACT
Flanking Amino Acid:
IVVQMAAANGIGRLVIGQNG
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.7
0.67
0.8
74.6
35.4
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
70.6
0.73
1.2
79.98
35.5

Associated Gene:

Gene:
PGM5
Ensembl Gene ID:
ENSAPLG00000011043
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038652
27584288 - 27697735
113448
ENSAPLT00000011529
27614361 - 27697735
83375
ENSAPLT00000046853
27614091 - 27697735
83645
ENSAPLT00000044866
27607066 - 27697735
90670
ENSAPLT00000041634
27615161 - 27697735
82575