Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27713409_27714095_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27713409 - 27714095

Intron Length:

687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGAATA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACAAAT

U12 Branch Point Sequence:

TTTCTCTTTACA

Flanking Amino Acid:

EKRTNRLVLIGRHLDKAIIK

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.1

1.04

0.7

89.9

22.1

Major BPS

69.5

0.48

73.5

28.6

Major PPT

92.5

0.96

0.6

87.6

22.6

Minor 5ss

37.1

-1.5

48.8

46.9

Minor BPS

69.4

0.6

1.6

80.69

34.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012182

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012737

27713335 - 27742252

28918

ENSAPLT00000042483

27713335 - 27742252

28918