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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27724784_27726817_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27724784 - 27726817
Intron Length:
2034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TACTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
LHAFDSLSGISLQKKLEHVK
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.5
39.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.9
0.76
0.8
81.3
34.9
Minor 5ss
36.2
-1.6
3.2
46.5
48.8
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042483
27713335 - 27742252
28918
ENSAPLT00000012737
27713335 - 27742252
28918