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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27731350_27732044_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27731350 - 27732044
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGGATA
5'SS Class:
major
3'SS Sequence:
TCTTAACATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
KPDGLVNEASRQVALADLII
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
71.7
39.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
69.3
0.43
0.9
63
37.5
Minor 5ss
42.4
-0.8
3.1
57.4
47
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042483
27713335 - 27742252
28918
ENSAPLT00000012737
27713335 - 27742252
28918