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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27732958_27734527_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27732958 - 27734527
Intron Length:
1570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
ATACCTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTGCTTTACAT
Flanking Amino Acid:
SVVDAKHGLQFLWLQSLTSG
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.2
26.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.4
0.66
0.9
73.4
36.2
Minor 5ss
38.2
-1.3
3.1
49.9
46.6
Minor BPS
53.7
0.19
1.8
72.3
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042483
27713335 - 27742252
28918