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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27782955_27783320_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27782955 - 27783320
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACATTTTAAAT
Flanking Amino Acid:
ALYDIKERKKISENFHCDLN
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.5
0.75
0.9
83.1
32.3
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
58.9
0.36
1.4
70.54
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017480
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040020
27772779 - 27788408
15630