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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27783471_27784103_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27783471 - 27784103
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTGTTATAT
Flanking Amino Acid:
PSSDIYLVIKIEKVLQQGEI
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75
0.56
0.9
71.2
39
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
48.1
-0
2.3
73.55
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017480
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040020
27772779 - 27788408
15630