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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27784185_27784973_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27784185 - 27784973
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGCTTTTAACA
Flanking Amino Acid:
MVLKESEAGKTKEKIEKLKA
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.4
0.68
0.8
80.4
31.6
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
72
0.69
1.2
76.03
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017480
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040020
27772779 - 27788408
15630